MicroRNA-613 represses lipogenesis in HepG2 cells by downregulating LXRα
© Zhong et al; licensee BioMed Central Ltd. 2013
Received: 4 December 2012
Accepted: 28 February 2013
Published: 8 March 2013
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© Zhong et al; licensee BioMed Central Ltd. 2013
Received: 4 December 2012
Accepted: 28 February 2013
Published: 8 March 2013
MicroRNAs (miRNAs) emerge as new important regulators of lipid homeostasis by regulating corresponding genes. MiR-613 is a newly discovered microRNA, of which the biological function is unknown. A recent report has shown that miR-613 downregulates liver X receptor α (LXRα), a ligand-activated nuclear receptor playing an important role in the regulation of lipid metabolism. The purpose of this study is to explore the effect and the molecular basis of miR-613 on lipogenesis in HepG2 cells.
HepG2 cells were transiently transfected with miR-613 mimic or control microRNA. Real time PCR, Western blot, Luciferase reporter assay and Oil Red O staining were employed to examine the expression of LXRα and its target genes involved in lipogenesis, binding site for miR-613 in 3′-untranslated region (3′-UTR) of LXRα mRNA and lipid droplet accumulation in the cells.
MiR-613 dramatically suppressed the expression of LXRα and its target genes including sterol-regulatory element binding protein 1c (SREBP-1c), fatty acid synthase (FAS), carbohydrate responsive element-binding protein (ChREBP) and acetyl-CoA carboxylase (ACC). Reporter assay showed that miR-613 directly bound to 3′-UTR of LXRα mRNA. Moreover, miR-613 significantly repressed LXRα-induced lipid droplet accumulation in HepG2 cells. Ectopic expression of LXRα without 3′-UTR markedly attenuated the miR-613-mediated downregulation of LXRα’s target genes and LXRα-induced lipid droplet accumulation.
MiR-613 suppresses lipogenesis by directly targeting LXRα in HepG2 cells, suggesting that miR-613 may serve as a novel target for regulating lipid homeostasis.
MicroRNAs (miRNAs) are a class of 22 nucleotide non-coding RNAs that regulate genes by binding to the 3′-untranslated region (3′-UTR) of target mRNAs. They are implicated in a variety of diseases including obesity, cancer, atherosclerosis and diabetes [1–3]. Recent studies have shown that miRNAs play an important role in lipid metabolism and several miRNAs have been identified, such as miR-33, miR-122, miR-27, miR-370 [4, 5]. MiR-33 regulates the ATP-binding cassette transporters (ABC transporters), ABCA1 and ABCG1, in addition to its role in fatty acid β-oxidation. MiR-122 regulates several genes that control fatty acid (FA) and Triglyceride (TG) biosynthesis, such as fatty acid synthase (FAS), acetyl-CoA carboxylase 1 (ACC-1), acetyl-CoA carboxylase 2 (ACC-2), and sterol regulatory element-binding protein 1c (SREBP-1c), as well as genes that regulate fatty acid β-oxidation, such as carnitine palmitoyltransferase 1α (CPT1α) . Similarly, other miRNAs regulate lipid homeostasis by targeting a variety of lipid metabolism–associated genes.
MiR-613 is a newly discovered miRNA, whose function and molecular basis in the biological process and diseases is incompletely understood. It is reported that miR-613 plays inhibitory role in repressing the Wnt pathway, but its effect on the Wnt-dependent biological processes is unclear. Another report demonstrates the negative role of miR-613 in a feedback loop in the auto-regulation of the human LXRα [7, 8] without showing its subsequent function. Therefore, it is important to clarify the biological function of miR-613 in future.
Lipid homeostasis is regulated by a family of transcription factors including the nuclear hormone receptor LXRα . The molecular mechanism responsible for LXRα-mediated lipogenesis has been largely attributed to the dramatic upregulation of the lipogenic genes such as SREBP-1c, FAS, ChREBP and ACC [10–14]. LXRα-induced activation of those genes can result in the enhancement of fatty acid synthesis, which contributes to a series of lipogenesis-associated diseases. Therefore, since miR-613 directly targets and decreases the expression of LXRα, further studies are needed to determine whether miR-613 can relief LXRα-induced lipogenesis via repression of LXRα expression.
In this study, we confirmed that miR-613 directly downregulated LXRα expression at both mRNA and protein levels. Subsequently, LXRα-induced lipogenic genes, such as SREBP-1c, FAS, ChREBP and ACC, were inhibited by miR-613, which was abolished by the ectopic expression of LXRα without 3′-UTR. Oil Red O staining revealed that miR-613 reduced LXRα-induced lipid droplet accumulation in HepG2 cells, which was also attenuated by ectopic expression of LXRα. Our study suggests miR-613 as a critical regulator of lipogenesis.
The miR-613 mimic (5′- AGGAAUGUUCCUUCUUUGCC -3′) and negative control (NC, 5′- UUCUCCGAACGUGUCACGUTT -3′) were synthesized by Shanghai GenePharma (Shanghai, China). TO901317 and GW3965 were purchased from Sigma Chemical Company (St Louis, MO, USA)
Human hepatocellular carcinoma cell line HepG2 was purchased from ATCC and cultured in Dulbeco’s Modified Eagle’s medium (Gibco, Shanghai, China) supplemented with 10% fetal bovine serum (FBS) (Gibco, Gaithersburg, USA), streptomycin (100 μg/ml) and antibiotics (100 U/ml penicillin and 100 μg/ml streptomycin) at 37°C in 5% CO2 humid incubator.
The DNA fragment corresponding to 76-113 nt of human LXRα 3′-UTR containing the miR-613 binding site was synthesized by Sangon Biotech and cloned into pMIR-REPORT vector (Invitrogen) at Sac I and Hin d III site downstream of the luciferase gene, and the resulting plasmid was named as pMIR/LXRαMIRE. Similarly, the DNA fragment containing mutations in miR-613 binding site was synthesized and cloned into pMIR-REPORT, and the resulting plasmid was named as pMIR/LXRαMIRE–mut. The 3′-UTR of the human LXRβ gene was amplified by PCR with the cDNA of HepG2 cells as template. Purified PCR products digested by Sac I and Hin d III (Takara) were cloned into pMIR-REPORT vector, and the resulting plasmid was named as pMIR-LXRβ.
HepG2 cells, grown to 70% to 80% confluence, were transiently transfected with luciferase reporters (pMIR-REPORT, pMIR-LXRβ, pMIR/LXRαMIRE, pMIR/LXRαMIRE–mut) and miR-613 mimic or mimic NC, using Lipofectamine 2000 according to the manufacturer’s instructions (Invitrogen). Transfection efficiency was monitored by cotransfection of pMIR-REPORT-β-gal (Promega). Luciferase activities were measured using a luciferase assay system (Promega). Transfection experiments were performed 3 times in triplicate. Data was represented as fold induction over reporter gene treated with vehicle alone.
24 hours after transfection, cells were exposed to TO901317 (5 μM) for 24 hours. Dimethyl sulfoxide (DMSO, Sigma) was used as controls. Then the whole cell proteins were harvested in lysis buffer (50 mM Tris-base, 150 mM NaCl, 1.0 mM EDTA, 0.1% SDS, 1% sodium deoxycholate and 1% TritonX-100) containing protease inhibitor cocktail. And the protein concentrations were determined using Bradford protein assay reagent (Bio-Rad). Subsequently, the total proteins (40 μg/well) were separated with 10% SDS-PAGE and transferred to PVDF (polyvinylidene fluoride) membranes (Millipore). After blocked 1 hour with 5% nonfat milk, the membranes were incubated with mouse anti-human LXRα antibody (Abcam), or mouse anti-human β-actin antibody (Santa Cruz Biotechnology) at 4°C over night. After washing with TBST, blots were incubated with HRP-labeled rabbit anti-mouse IgG (Invitrogen) for 1 hour at room temperature. Detection was achieved using enhanced chemiluminescence reagents (Pierce) and exposure to film.
Primers used for PCR
LXRα 3′-UTR Forward
LXRα 3′-UTR Reverse
LXRβ 3′-UTR Forward
LXRβ 3′-UTR Reverse
Oil Red O stock solution was prepared in isopropanol (0.25 g/100 ml) and heated to 100°C for 10 min. TO901317-treated cells were fixed with 4% paraformaldehyde for 30 min and washed with PBS. Then cells were soaked in 60% Oil Red O stock solution diluted by distilled water for 30 min. Stained cells were washed with PBS until the background became clear. Images were captured with fluorescence microscopy (Olympus).
All data are expressed as means ± SD unless otherwise stated. Comparisons between two groups were made with unpaired Student’s t-tests. Non-parametric comparisons between three or more groups were made with ANOVA followed by Kruskal–Wallis post hoc analysis. In all cases, P < 0.05 was considered statistically significant.
With the development of our modern society, the people’s lifestyle is characterized by an overabundant supply of food rich in energy and little physical activity, which enhance the lipid accumulation leading to a series of lipogenesis-associated diseases including dyslipidemia, hypertension, heart disease and fatty liver [15–18]. Therefore, the negative regulation of lipid synthesis may help with the treatment for lipid metabolism disorders. In our present study, we found miR-613 as an anti-lipogenesis miRNA through the suppression of LXRα, which provided a novel effective target for the therapy of lipogenesis-associated diseases.
From the recent studies, our understanding of miR-613 is extremely limited. It is reported that miR-613 is involved in the auto-regulation of LXRα by directly targeting LXRα 3′-UTR, but its biological function isn’t mentioned. Here, we first revealed the anti-lipogenic function of miR-613. It repressed expression of lipogenic genes and accumulation of lipid droplets in HepG2 cells by suppression of LXRα, which suggested the potential use of miR-613 as a therapeutic tool in lipogenesis-associated diseases, such as hepatic steatosis. Another report has demonstrated that miR-613 has inhibitory effect on the activity of the Wnt pathway by targeting the pathway upstream of Axin or active β-catenin. However, there is no evidence showing the effect of miR-613 on Wnt-dependent human cancer cells and the precise and direct targets of miR-613 [7, 8]. Consequently, both the effects of miR-613 on Wnt-dependent cell proliferation and its other biological functions remain to be clarified. Moreover, for one miRNA can target more than one gene, further studies are needed to establish target landscape of miR-613.
MiRNAs regulate gene expression by binding mRNAs at 3′-UTR/5′-UTR or open reading frame (ORF), leading to translational repression and mRNA cleavage [19–21]. Though the targeting site for miR-613 at LXRα 3′-UTR has been uncovered, further study is needed to find out whether miR-613 can regulate LXRα by binding at 5′-UTR or ORF of LXRα mRNA. Unfortunately, bioinformatic analysis showed no possible binding site for miR-613 at ORF of LXRα mRNA, which might not be the mechanism by which miR-613 regulates LXRα.
Increasing genes are shown to be in the control of LXRα, but the regulation of LXRα itself is not fully understood. It has been reported that peroxisome proliferator-activated receptor (PPAR), retinoid-related orphan receptor (ROR), protein kinase C (PKC) and oxysterol binding protein related protein 1S (ORP1S) can potentially regulate the activation of LXRα [22–25]. In addition, the epigenic modification such as phosphorylation and SUMOylation, may affect LXRα actions [26, 27]. Thus there are opportunities for miR-613 to indirectly regulate LXRα through the modulation of its upstream regulators such as PPAR, ROR and PKC. Similarly, although we demonstrated that miR-613 indirectly affected the expression of lipogenic genes, it needs to be examined whether the miRNA could directly target these lipogenic genes.
In our present study, we demonstrated that miR-613 function as a novel modulater participating in lipid metabolism. It repressed lipogenic genes including SREBP-1c, FAS, ChREBP and ACC by suppression of LXRα expression. Subsequently, the accumulation of lipid droplets in HpG2 cells was significantly decreased by miR-613. These findings suggested that miR-613 was a potential target for the therapy of lipid dysfunction associated diseases.
DZ is a Ph.D. student; FTH, GH, YZ and MG are Ph.D. YJZ is a medical scientific researcher. GZW and CJH are Ph.D. students.
Liver X receptor α/β
Sterol-regulatory element binding protein 1c
Fatty acid synthase
Carbohydrate responsive element-binding protein
Retinoid X receptor α
Peroxisome proliferator-activated receptor
Retinoid-related orphan receptor
Protein kinase C
Oxysterol binding protein related protein 1S
Carnitine palmitoyltransferase 1α.
This work was supported by the National Natural Science Foundation of China (No.81273226, 81102276) and the Natural Science Foundation Project of Chongqing (No. cstc2012jjA10054).
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