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Table 1 Gene expression that either upregulated or downregulated in the whole genome of fat-1 transgenic cattle (p-value < 0.05 and fc ≥ 1)

From: Fat-1 transgenic cattle as a model to study the function of ω-3 fatty acids

Genbank Accession Gene name Fold change
Metabolism   
NM_177494 carnitine palmitoyltransferase 1 1.635675
NM_174530 cytochrome P450, family 2, subfamily E, polypeptide 1 3.129168
NM_001100366 cytochrome P450, family 2, subfamily S, polypeptide 1 1.085825
NM_001099367 cytochrome P450, family 3, subfamily A, polypeptide 4 1.0726473
NM_001046391 cytochrome P450, family 4, subfamily F, polypeptide 3 1.021228
NM_174810 ATPase, H+ transporting, lysosomal 31 kDa, V1 subunit E1 1.0310035
NM_174717 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 1.0874296
NM_001083636 peroxisome proliferator activated receptor 1.1880234
AB257751 low density lipoprotein receptor-related protein 5 -1.1805074
NM_001077843 low density lipoprotein receptor-related protein 4 -1.5911577
Immunity   
XM_001250583 Indoleamine 2, 3-dioxygenase 2.0460057
XR_042605 granulocyte-macrophage colony-stimulating-factor receptor α 2.167638
NM_174358 interleukin-2 receptor α -2.3078954
NM_174093 interleukin-1, beta -2.8775382
NM_174086 interferon-γ -2.1359362
NM_173923 nterleukin-6 -1.8120259
XM_591164 interleukin-10 receptor α -1.107485
XM_615064 CD4 molecule -1.19058
XM_001787801 WC1 -6.185475
XM_593126 lymphocyte-activation gene 3 -2.201507
  similar to Zeta-chain associated protein kinase 70 kDa -2.379626
NM_177493 acetylserotonin O-methyltransferase -2.1411839
NM_174589 prostaglandin E receptor 4 -1.1957332
NM_001166554 prostaglandin E synthase 2 -1.0895984
NM_001078151 mature T-cell proliferation 1 -1.0484107
BC142016 T-cell receptor delta chain -2.3310187
XM_603087 T-cell acute lymphocytic leukemia 2 -1.1402003
NM_001075374 lymphocyte-specific protein 1 -1.2811403
NM_001102073 immunoglobulin-like domain containing receptor 2 -1.6142586
NM_001076844 lymphocyte cytosolic protein 2 -1.2404228
NM_001034720 lymphocyte cytosolic protein 1 -1.0534877
Inflammation and cancer   
NM_001101158 cell adhesion molecule 1 10.783385
NM_001035468 acireductone dioxygenase 1 2.893599
NM_001083481 suppression of tumorigenicity 7 like 1.1566072
NM_001035287 serpin peptidase inhibitor 7.2662635
NM_001083645 RAS-like, family 10, member A 2.4159741
NM_001101092 serine/threonine kinase 38 like 1.0883793
XM_608304 NLR family, pyrin domain containing 13 2.8275476
NM_174532 DnaJ (Hsp40) homolog, subfamily B, member 6 1.0343608
NM_175804 nuclear receptor subfamily 2, group F, member 1 1.1831405
XM_613126 chondroitin sulfate proteoglycan 4 -2.4661286
NM_001024521 TNF receptor-associated factor 7 -1.182513
XM_594145 L1 cell adhesion molecule -2.0497224
XM_604945 adenomatosis polyposis coli 2 -2.1012108
XM_608123 laminin, alpha 4 -2.7227702
AB043995 matrix metallopeptidase 3 -2.013966
XM_597651 matrix metallopeptidase 15 -1.0679191
NM_174112 matrix metallopeptidase 1 -1.0266808
XM_604345 matrix metallopeptidase 16 -1.1511999
XM_609577 matrix metallopeptidase 20 -1.0834453
NM_001075502 nitric oxide synthase interacting protein -1.027486
NM_001076799 nitric oxide synthase 2 -1.1507416
NM_174589 prostaglandin E receptor 4 -1.1957332
NM_174443 prostaglandin E synthase -1.0576057
NM_001166554 prostaglandin E synthase 2 -1.0895984
DV775423 claudin 10 -1.221211
XM_601963 β-catenin -2.1087096
XM_609364 NF-kB -1.7619956
NM_001102498 NF-kB activating protein-like -1.2362162
XM_582283 Huntingtin interacting protein-1 2.2835305
NM_001159566 transforming growth factor, beta receptor II -1.1494738
NM_001035313 transforming growth factor beta 1 induced transcript 1 -1.560125
XM_001253071 transforming growth factor, beta receptor III -1.0382366
NM_001101910 tumor protein p53 binding protein 1 -1.1203252
NM_174201 tumor protein p53 -1.1353312
NM_001076401 gamma-glutamyltransferase 7 -2.7013438
Nervous development   
XM_588574 protocadherin gamma subfamily A, 6 4.1054792
XM_001254336 protocadherin gamma subfamily A, 8 3.6014705
NM_001102513 protocadherin gamma subfamily B, 4 1.5915743
XM_870459 protocadherin gamma subfamily A, 9 3.789133
BC103033 potassium channel, subfamily K, member 10 1.2212783
XM_001253926 Olfactory receptor 13H1 4.0936475
NM_001076371 SEPTIN5 2.3829544
XM_608747 nucleoredoxin-like 2 6.2915673
XM_001788280 semaphorin 5B -3.1176894
Fertility   
NM_001034205 Calmegin 2.228811
XM_608786 SRY (sex determining region Y)-box 8 1.8772229
NM_001076057 EF-hand calcium binding domain 6 -2.55162