Table 4 Summary of Zaykin’s z 2 statistic based on LD correlation structures in HapMap CEU and GIH populations
From: Evaluation of seven common lipid associated loci in a large Indian sib pair study
SNP (Gene) | Number of SNPs in the LD comparison matrix | Number of z2values in random permutations greater than observed z2value | Number of z2values in random permutations lower than observed z2value | Empirical p-value (one-sided test for difference in LD) |
|---|---|---|---|---|
rs662799 (APOA5) | 25 | 4302 | 95699 | 0.04 |
rs562338 (APOB) | 14 | 26258 | 73743 | 0.26 |
rs1864163 (CETP) | 30 | 23107 | 76894 | 0.23 |
rs780094 (GCKR) | 13 | 27258 | 72743 | 0.27 |
rs6511720 (LDLR) | 6 | 17146 | 82855 | 0.17 |
rs4775041 (LIPC) | 40 | 41804 | 58917 | 0.41 |
rs10503669 (LPL) | 36 | 36613 | 63388 | 0.37 |