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Table 1 Selected polymorphisms in phospholipase A 2 genes

From: Association between polymorphisms in phospholipase A2 genes and the plasma triglyceride response to an n-3 PUFA supplementation: a clinical trial

Gene dbSNP No. Sequence Position Allele frequency
PLA2G2A rs876018 ATAC[A/T]TGAT 3-UTR A (n = 352) 0.8421 T (n = 66) 0.1579
rs955587 GCGT[A/G]GACT Intron G (n = 352) 0.8381 A (n = 68) 0.1619
rs3753827 GTAA[G/T]GCCC Intron G (n = 233) 0.5574 T (n = 185) 0.4426
rs11573156 GGAG[C/G]AGCT 5-UTR C (n = 326) 0.7762 G (n = 94) 0.2238
rs11573142 ATGG[C/T]ATTC NearGene-5 T (n = 406) 0.9667 C (n = 14) 0.0333
PLA2G2C rs6426616 AGCC[A/G]GCCC Missense Q [Gln]- > R [Arg] G (n = 249) 0.5929 A (n = 171) 0.4071
rs12139100 GGGG[C/T]GAAG Stop-gain C (n = 356) 0.8476 T (n = 64) 0.1524
rs10916716 ACCC[A/G]GGCC Intron A (n = 358) 0.8524 G (n = 62) 0.1476
rs2301475 GGAG[A/G]TATT Intron A (n = 294) 0.7000 G (n = 98) 0.3000
rs10916712 GAAG[G/C]TGTG 3-UTR C (n = 322) 0.76677 G (n = 98) 0.2333
rs10916718 GCTC[A/G]AAGC Intron A (n = 237) 0.5643 G (n = 183) 0.4357
PLA2G2D rs578459 TATC[A/T]TCCA 3-UTR A (n = 234) 0.5571 T (n = 186) 0.4429
rs16823482 ATTT[T/C]TCAC Intron T (n = 399) 0.9500 C (n = 21) 0.0500
rs3736979 ACTG[G/A]GTGC Intron G (n = 309) 0.7357 A (n = 111) 0.2643
rs584367 GTGC[A/G]GCAT Missense S [Ser] - > G [Gly] G (n = 262) 0.6238 A (n = 158) 0.3762
rs12045689 GGAG[T/C]AAGA Intron T (n = 381) 0.9071 C (n = 39) 0.0929
rs679667 CCCC[G/A]CTGC Intron G (n = 381) 0.9071 A (n = 39) 0.0929
rs17354769 AACT[A/G]GGGC NearGene-5 A (n = 399) 0.9545 G (n = 19) 0.0455
rs10916711 CTAG[T/C]GATT Intron T (n = 266) 0.6425 C (n = 148) 0.3575
PLA2G2F rs12065685 GGGC[C/T]TCTG Non-coding exon T (n = 369) 0.8786 C (n = 51) 0.1214
rs6657574 TGAC[C/T]TTGC Non-coding exon C (n = 345) 0.8214 T (n = 75) 0.1786
rs11582551 ATCT[C/T]CTGT Intron T (n = 303) 0.7214 C (n = 117) 0.2786
rs818571 CGCC[C/T]GGAC 3-UTR C (n = 296) 0.7048 T (n = 124) 0.2952
rs631134 ATTC[G/A]GTGA NearGene-5 G (n = 335) 0.7976 A (n = 85) 0.2024
rs11583904 TGAG[A/G]TGGA Intron A (n = 71) 0.169 G (n = 349) 0.831
PLA2G4A rs979924 TACA[C/T]TGCA NearGene-5 C (n = 33) 0.0786 T (n = 387) 0.9214
rs2076075 ATTC[G/A]TATAC Intron G (n = 381) 0.9071 A (n = 39) 0.0929
rs3736741 TTCC[A/G]GGCT Intron A (n = 320) 0.7619 G (n = 100) 0.2381
rs10911949 CTAA[C/T]GGCA Intron C (n = 222) 0.5286 T (n = 198) 0.4714
rs10752979 TCTC[A/G]TTGT Intron A (n = 68) 0.1619 G (n = 352) 0.8381
rs1160719 TTTC[A/G]TTAT Intron A (n = 79) 0.1881 G (n = 341) 0.8119
rs10737277 ATCA[C/G]ACAC Intron C (n = 231) 0.55 G (n = 189) 0.45
rs12720702 AATA[A/G]CAAG Intron A (n = 386) 0.919 G (n = 34) 0.081
rs7522213 ATTA[C/T]ATCC Intron C (n = 403) 0.9595 T (n = 17) 0.0405
rs7540602 CTCT[G/T]GACA Intron G (n = 379) 0.9024 T (n = 41) 0.0976
rs10157410 TTTT[C/G]ACTA Intron C (n = 57) 0.1357 G (n = 363) 0.8643
rs12720497 CCAG[C/T]GACC Intron C (n = 262) 0.6238 T (n = 158) 0.3762
rs4651331 CAAG[G/T]AGCA Intron G (n = 101) 0.2405 T (n = 319) 0.7595
rs1569480 TCAC[A/G]ATGG Intron A (n = 236) 0.5619 G (n = 184) 0.4381
rs10911935 ACTC[G/T]TGAT Intron G (n = 337) 0.8024 T (n = 83) 0.1976
rs12353944 AAAA[C/T]CTGA Intron C (n = 76) 0.181 T (n = 344) 0.819
rs11576330 CACA[C/T]CCAC Intron C (n = 38) 0.0905 T (n = 382) 0.9095
rs10489410 TTTC[G/T]TAGT Intron G (n = 16) 0.0381 T (n = 404) 0.9619
rs10911946 TTAG[C/T]TGAC Intron C (n = 299) 0.7119 T (n = 121) 0.2881
rs3820185 CATG[G/T]TGAG Intron G (n = 283) 0.3262 T (n = 137) 0.3262
rs12746200 CCAG[A/G]ATCA Intron A (n = 384) 0.9143 G (n = 36) 0.0857
rs11587539 TAGG[A/T]TTTG Intron A (n = 243) 0.5786 T (n = 177) 0.4214
PLA2G6 rs5750546 TAAA[G/A]GAAA Intron G (n = 259) 0.6167 A (n = 161) 0.3833
rs132989 GGGG[G/A]ACAG Intron G (n = 392) 0.9333 A (n = 28) 0.0677
rs133016 AGTG[G/A]ACCC Intron G (n = 215) 0.5119 A (n = 205) 0.4881
rs2235346 TGCC[C/A]GGGG Intron C (n = 200) 0.4762 A (n = 220) 0.5238
rs2284060 AATC[A/G]ACGC Intron A (n = 228) 0.5429 G (n = 192) 0.4571
PLA2G7 rs12195701 ATGT[G/A]GATC Intron G (n = 333) 0.7929 A (n = 87) 0.2071
rs12528807 CCAC[A/C]GATC Intron A (n = 379) 0.9024 C (n = 41) 0.0976
rs1421368 ATGA[C/T]CTTA Intron C (n = 34) 0.081 T (386) 0.919
rs1421378 TGAT[T/C]CGGA NearGene-5 T (n = 244) 0.581 C (n = 176) 0.419
rs17288905 TCCA[T/C]AGCA Intron T (n = 378) 0.9214 C (n = 33) 0.0786
rs1805017 GATC[G/A]CCTT Missense R [Arg] - > H [His] G (n = 304) 0.7238 A (n = 116) 0.2762
rs1805018 GAAA[T/C]AGGG Missense I [Ile] - > T [Thr] T (n = 403) 0.9595 C (n = 17) 0.0405
rs6929105 TGAA[A/G]GATG Intron A (n = 98) 0.2333 G (n = 322) 0.7667
rs7756935 GGGG[G/T]TAGA Intron G (n = 85) 0.2024 T (n = 335) 0.7976
  1. Allelic frequencies were obtained using the ALLELE Procedure (SAS Genetics v9.3).