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Table 1 Selected polymorphisms in phospholipase A 2 genes

From: Association between polymorphisms in phospholipase A2 genes and the plasma triglyceride response to an n-3 PUFA supplementation: a clinical trial

Gene

dbSNP No.

Sequence

Position

Allele frequency

PLA2G2A

rs876018

ATAC[A/T]TGAT

3-UTR

A (n = 352) 0.8421

T (n = 66) 0.1579

rs955587

GCGT[A/G]GACT

Intron

G (n = 352) 0.8381

A (n = 68) 0.1619

rs3753827

GTAA[G/T]GCCC

Intron

G (n = 233) 0.5574

T (n = 185) 0.4426

rs11573156

GGAG[C/G]AGCT

5-UTR

C (n = 326) 0.7762

G (n = 94) 0.2238

rs11573142

ATGG[C/T]ATTC

NearGene-5

T (n = 406) 0.9667

C (n = 14) 0.0333

PLA2G2C

rs6426616

AGCC[A/G]GCCC

Missense Q [Gln]- > R [Arg]

G (n = 249) 0.5929

A (n = 171) 0.4071

rs12139100

GGGG[C/T]GAAG

Stop-gain

C (n = 356) 0.8476

T (n = 64) 0.1524

rs10916716

ACCC[A/G]GGCC

Intron

A (n = 358) 0.8524

G (n = 62) 0.1476

rs2301475

GGAG[A/G]TATT

Intron

A (n = 294) 0.7000

G (n = 98) 0.3000

rs10916712

GAAG[G/C]TGTG

3-UTR

C (n = 322) 0.76677

G (n = 98) 0.2333

rs10916718

GCTC[A/G]AAGC

Intron

A (n = 237) 0.5643

G (n = 183) 0.4357

PLA2G2D

rs578459

TATC[A/T]TCCA

3-UTR

A (n = 234) 0.5571

T (n = 186) 0.4429

rs16823482

ATTT[T/C]TCAC

Intron

T (n = 399) 0.9500

C (n = 21) 0.0500

rs3736979

ACTG[G/A]GTGC

Intron

G (n = 309) 0.7357

A (n = 111) 0.2643

rs584367

GTGC[A/G]GCAT

Missense S [Ser] - > G [Gly]

G (n = 262) 0.6238

A (n = 158) 0.3762

rs12045689

GGAG[T/C]AAGA

Intron

T (n = 381) 0.9071

C (n = 39) 0.0929

rs679667

CCCC[G/A]CTGC

Intron

G (n = 381) 0.9071

A (n = 39) 0.0929

rs17354769

AACT[A/G]GGGC

NearGene-5

A (n = 399) 0.9545

G (n = 19) 0.0455

rs10916711

CTAG[T/C]GATT

Intron

T (n = 266) 0.6425

C (n = 148) 0.3575

PLA2G2F

rs12065685

GGGC[C/T]TCTG

Non-coding exon

T (n = 369) 0.8786

C (n = 51) 0.1214

rs6657574

TGAC[C/T]TTGC

Non-coding exon

C (n = 345) 0.8214

T (n = 75) 0.1786

rs11582551

ATCT[C/T]CTGT

Intron

T (n = 303) 0.7214

C (n = 117) 0.2786

rs818571

CGCC[C/T]GGAC

3-UTR

C (n = 296) 0.7048

T (n = 124) 0.2952

rs631134

ATTC[G/A]GTGA

NearGene-5

G (n = 335) 0.7976

A (n = 85) 0.2024

rs11583904

TGAG[A/G]TGGA

Intron

A (n = 71) 0.169

G (n = 349) 0.831

PLA2G4A

rs979924

TACA[C/T]TGCA

NearGene-5

C (n = 33) 0.0786

T (n = 387) 0.9214

rs2076075

ATTC[G/A]TATAC

Intron

G (n = 381) 0.9071

A (n = 39) 0.0929

rs3736741

TTCC[A/G]GGCT

Intron

A (n = 320) 0.7619

G (n = 100) 0.2381

rs10911949

CTAA[C/T]GGCA

Intron

C (n = 222) 0.5286

T (n = 198) 0.4714

rs10752979

TCTC[A/G]TTGT

Intron

A (n = 68) 0.1619

G (n = 352) 0.8381

rs1160719

TTTC[A/G]TTAT

Intron

A (n = 79) 0.1881

G (n = 341) 0.8119

rs10737277

ATCA[C/G]ACAC

Intron

C (n = 231) 0.55

G (n = 189) 0.45

rs12720702

AATA[A/G]CAAG

Intron

A (n = 386) 0.919

G (n = 34) 0.081

rs7522213

ATTA[C/T]ATCC

Intron

C (n = 403) 0.9595

T (n = 17) 0.0405

rs7540602

CTCT[G/T]GACA

Intron

G (n = 379) 0.9024

T (n = 41) 0.0976

rs10157410

TTTT[C/G]ACTA

Intron

C (n = 57) 0.1357

G (n = 363) 0.8643

rs12720497

CCAG[C/T]GACC

Intron

C (n = 262) 0.6238

T (n = 158) 0.3762

rs4651331

CAAG[G/T]AGCA

Intron

G (n = 101) 0.2405

T (n = 319) 0.7595

rs1569480

TCAC[A/G]ATGG

Intron

A (n = 236) 0.5619

G (n = 184) 0.4381

rs10911935

ACTC[G/T]TGAT

Intron

G (n = 337) 0.8024

T (n = 83) 0.1976

rs12353944

AAAA[C/T]CTGA

Intron

C (n = 76) 0.181

T (n = 344) 0.819

rs11576330

CACA[C/T]CCAC

Intron

C (n = 38) 0.0905

T (n = 382) 0.9095

rs10489410

TTTC[G/T]TAGT

Intron

G (n = 16) 0.0381

T (n = 404) 0.9619

rs10911946

TTAG[C/T]TGAC

Intron

C (n = 299) 0.7119

T (n = 121) 0.2881

rs3820185

CATG[G/T]TGAG

Intron

G (n = 283) 0.3262

T (n = 137) 0.3262

rs12746200

CCAG[A/G]ATCA

Intron

A (n = 384) 0.9143

G (n = 36) 0.0857

rs11587539

TAGG[A/T]TTTG

Intron

A (n = 243) 0.5786

T (n = 177) 0.4214

PLA2G6

rs5750546

TAAA[G/A]GAAA

Intron

G (n = 259) 0.6167

A (n = 161) 0.3833

rs132989

GGGG[G/A]ACAG

Intron

G (n = 392) 0.9333

A (n = 28) 0.0677

rs133016

AGTG[G/A]ACCC

Intron

G (n = 215) 0.5119

A (n = 205) 0.4881

rs2235346

TGCC[C/A]GGGG

Intron

C (n = 200) 0.4762

A (n = 220) 0.5238

rs2284060

AATC[A/G]ACGC

Intron

A (n = 228) 0.5429

G (n = 192) 0.4571

PLA2G7

rs12195701

ATGT[G/A]GATC

Intron

G (n = 333) 0.7929

A (n = 87) 0.2071

rs12528807

CCAC[A/C]GATC

Intron

A (n = 379) 0.9024

C (n = 41) 0.0976

rs1421368

ATGA[C/T]CTTA

Intron

C (n = 34) 0.081

T (386) 0.919

rs1421378

TGAT[T/C]CGGA

NearGene-5

T (n = 244) 0.581

C (n = 176) 0.419

rs17288905

TCCA[T/C]AGCA

Intron

T (n = 378) 0.9214

C (n = 33) 0.0786

rs1805017

GATC[G/A]CCTT

Missense R [Arg] - > H [His]

G (n = 304) 0.7238

A (n = 116) 0.2762

rs1805018

GAAA[T/C]AGGG

Missense I [Ile] - > T [Thr]

T (n = 403) 0.9595

C (n = 17) 0.0405

rs6929105

TGAA[A/G]GATG

Intron

A (n = 98) 0.2333

G (n = 322) 0.7667

rs7756935

GGGG[G/T]TAGA

Intron

G (n = 85) 0.2024

T (n = 335) 0.7976

  1. Allelic frequencies were obtained using the ALLELE Procedure (SAS Genetics v9.3).