Haplotypesa | Freq. | HBAT teststatistics |
P
|
P
-permutation
b
| Global P |
---|
Var(S)
|
z
| | | |
---|
rs5803(T/C)-rs711746(G/A)
| | | |
H1 | C-A | 0.40 | 133.45 | 0.70 | 0.482 | 0.486 |
0.028
c
|
H2 | C-G | 0.38 | 134.59 | 1.81 | 0.071 | 0.069 | |
H3 | T-A | 0.18 | 93.02 | −2.94 |
0.003
c
|
0.003
c
| |
- Abbreviations: Freq. frequency of haplotypes, Var (S) is a matrix, calculated under the null hypothesis (g.e. no linkage and no association) and used to standardize S
- aHaplotypes, whose frequencies < 0.05 or number of informative families > 10, were excluded in table and in global p-value calculation; bp-permutation, whole haplotype permutation test (the default time is 10,000); cBold type denotes p < 0.05