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Table 2 Selected SNPs and their relevant information. Reported Minor Allele Frequency and predicted consequence were obtained from http://www.ncbi.nlm.nih.gov/snp/, NCBI

From: Sequence analysis and variant identification at the APOC3 gene locus indicates association of rs5218 with BMI in a sample of Kuwaiti’s

SNP

Position (GRCh38.p12)

Consequence

GenomAD reported MAF

Context sequence

rs5128

(C3238G)

chr11:116832924

g.8017G > C

3’UTR Variant

G = 0.16051 (39,468/245886)

AAGTCCACCTGCCTATCCATCCTGC [C/G]AGCTCCTTGGGTCCTGCAATCTCCA

rs2854117

(C-482 T)

chr11:116829426

g.4519 T > C

5’UTR Transcript Variant

C = 0 0.4163 (12,835/30834)

AGGCCTTGCCGGAGCCACTGATGCC [T/C]GGTCTTCTGTGCCTTTACTCCAAAC

rs2070668

(T528G)

chr11:11683043

g.5530 T > G

Intron (1) Variant

G = 0.4314 (13,268/30758)

[T/G]AGCAGGGAGCCGGCCCCTACTCCTT

KUAPOC3N2

chr11:116700819

g.5196 A > G

Intron (1) Variant

N/A

Custom Designed NovelSNP2:

Forward: GGTCCTCAGTGCCTGCTG

Reverse:TCTAGGGATGAACTGAGCAGACA

KUAPOC3N3

chr11:116701159

g. 5536G > A

Intron (1) Variant

N/A

Custom Designed NovelSNP3:

Forward: CCCCCACCCCTCATCATAAC

Reverse: CTATGTAGCTTTGGGCAAGTGA

  1. SNP Single nucleotide polymorphism, 3′UTR 3′-untranslated region, 5′UTR 5′-untranslated region, N/A Not available
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Lipids in Health and Disease

ISSN: 1476-511X