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Table 2 The characteristics of the three genetic variants used for haplotype located in the 19q13 loci

From: A minor allele of the haplotype located in the 19q13 loci is associated with a decreased risk of hyper-LDL-cholesterolemia, and a balanced diet and high protein intake can reduce the risk

SNP

Position

Mi

Ma

OR

P value for OR

MAF

HWE_P

Gene

Location

rs7259620

45,407,788

A

G

0.834

3.79E-19

0.284

0.737

APOE

near-gene-5

rs403155

45,363,299

T

C

0.789

3.30E-15

0.107

0.475

PVRL2

intron

rs157581

45,395,714

C

T

0.911

2.64E-19

0.236

0.250

TOMM40

coding-synonymous

rs10406604

45,723,986

A

G

0.917

8.58E-05

0.221

0.094

EXOC3L2

intron

rs3212986

45,912,736

A

C

0.926

1.64E-04

0.266

0.976

CD3EAP

missense

  1. APOE Apolipoprotein E, PVRL2 Poliovirus receptor-related 2 (nectin-2 and CD112), TOMM40 Translocase of outer mitochondrial membrane 40 homolog, EXOC3L2 Exocyst complex component 3 Like 2, CD3EAP CD3e molecule associated protein, CHR Chromosome, SNP Single nucleotide polymorphism, Mi Minor allele, Ma Major allele, OR Odds ratios (OR) for serum LDL concentration in the reference of the major allele; P value for OR adjusted for age, gender, residence area, body mass index, and energy intake, MAF Minor allele frequency, HWE_P P value for Hardy-Weinberg equilibrium