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Table 1 GWAS and AS-SNPs in high LD at GALNT2

From: Looking beyond GWAS: allele-specific transcription factor binding drives the association of GALNT2 to HDL-C plasma levels

Chr_id

Chr_pos (hg19)

AS-SNP

RegulomeDB†

In LD‡ with GWAS SNP

Associated traits

1

230294715

rs4846913

4

rs2144300a

HDL-C, TG

1

230294715

rs4846913

4

rs4846914b

HDL-C, TG

1

230294715

rs4846913

4

rs10489615c

HDL-C

1

230294715

rs4846913

4

rs10127775d

Metabolite levels

  1. † Regulome DB score as an index of regulatory activity [14]
  2. ‡ LD with r2 ≥ 0,8
  3. a[3, 15]
  4. b[4, 5, 16, 17]
  5. c[18]
  6. d[19]
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Lipids in Health and Disease

ISSN: 1476-511X