Comparative transcriptomics of SMtb | RNA profiling method | Validation | #Transcript | Reference |
---|---|---|---|---|
SMtb vs culture with 7H10 agar /7H9 broth/Dubos a | Microarray | qRT-PCR | 516 | [29] |
SMtb vs culture | Microarray | qRT-PCR | 557 | [89] |
SMtb vs MAF/Mtb | qRT-PCR | Â | 2179 | [90] |
SMtb vs Exponential phase of liquid culture | Dual RNA seq | Nano String | 198 | [91] |
SMtb vs Stationary phase of liquid culture | Dual RNA seq | Nano String | 392 | [91] |
Sputum vs MGIT 460 culture | Microarray | qRT-PCR | 1083 | [92] |
SMtb at Day 3 vs SMtb at day0 treatment | Microarray | qRT-PCR | 109 | [92] |
SMtb at Day7/14 vs day 0 treatment | Microarray | qRT-PCR | 39 | [92] |
Lipid rich Dubos brothb vs Dextrose rich Dubos brothb | RNA seq | qRT-PCR | – | [60] |
SMtb/ BAL-Mtb vs 7H9/ DTAc culture | qRT-PCR |  | – | [93] |
SMtb before Rx vs SMtb after Rx | qRT-PCR | qRT-PCR | 2411 | [94] |
Sputum Mtb vS culture H37Rv | Microarray | qRT-PCR | – | [95] |