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Effect of alirocumab on specific lipoprotein non-high-density lipoprotein cholesterol and subfractions as measured by the vertical auto profile method: analysis of 3 randomized trials versus placebo



The effect of alirocumab on potentially atherogenic lipoprotein subfractions was assessed in a post hoc analysis using the vertical auto profile (VAP) method.


Patients from three Phase II studies with low-density lipoprotein cholesterol (LDL-C) ≥2.59 mmol/L (100 mg/dL) at baseline on stable statin therapy were randomised to receive subcutaneous alirocumab 50–150 mg every 2 weeks (Q2W) or 150–300 mg every 4 weeks (according to study) or placebo for 8–12 weeks. Samples from patients treated with alirocumab 150 mg Q2W (n = 74; dose common to all three trials) or placebo (n = 71) were analysed by VAP. Percent change in lipoprotein subfractions with alirocumab vs. placebo was analysed at Weeks 6, 8 or 12 using analysis of covariance.


Alirocumab significantly reduced LDL-C and the cholesterol content of subfractions LDL1, LDL2 and LDL3+4. Significant reductions were also observed in triglycerides, apolipoproteins CII and CIII and the cholesterol content of very low-density, intermediate-density, and remnant lipoproteins.


Alirocumab achieved reductions across a spectrum of atherogenic lipoproteins in patients receiving background statin therapy.

Trial registration identifiers: NCT01288443, NCT01288469, NCT01266876


Lipoproteins consist of lipids and apolipoproteins and can be categorised by density into five major classes: chylomicrons, very low-density lipoprotein (VLDL), low-density lipoprotein (LDL), intermediate-density lipoprotein (IDL) and high-density lipoprotein (HDL) [1]. Elevated levels of LDL cholesterol (LDL-C) are a well-established risk factor for the development of cardiovascular disease [2]. LDL-C is composed of a spectrum of LDL particles of different densities and states of lipidation, all of which are atherogenic [3]. Levels of the most dense LDL-C particles may be disproportionately raised in patients with low HDL cholesterol (HDL-C) and high triglycerides [4]. Analysis of changes in LDL subfractions may provide additional information to help direct individual patient treatment [5], although it is currently not recommended in guidelines [6].

In addition to LDL-C, triglyceride-rich remnant lipoproteins (RLP) are also atherogenic [4]. RLPs are products of VLDL lipolysis, and include VLDL3 (the smallest and most dense particles of the VLDL subclass) and IDLs (the direct precursor to LDL formation). Serum concentration of RLPs are often increased in patients with elevated triglyceride levels, such as those with lipoprotein lipase deficiency, insulin resistance, and metabolic syndrome. Two important regulators of triglyceride levels are apolipoprotein (apo) CII and CIII. ApoCIII inhibits lipoprotein lipase-mediated catabolism of VLDL triglycerides [7]. ApoCII appears to have a more complex relationship with VLDL and lipoprotein lipase activity that may depend on baseline triglyceride levels, and is generally an important activator of lipoprotein lipase [8].

Ultracentrifugation is the standard for direct measurement of LDL-C levels, as Friedewald calculation frequently underestimates LDL-C at levels <100 mg/dL or in the setting of elevated triglycerides [9]. Vertical auto profiling (VAP), a rapid and highly sensitive direct ultracentrifugation method, provides measurements of lipoproteins and subfractions not assessed using standard techniques [1012].

Proprotein convertase subtilisin/kexin type 9 (PCSK9) regulates levels of the LDL receptor [13]. Alirocumab is a fully human monoclonal antibody to PCSK9 which significantly reduced LDL-C levels in clinical trials, with overall adverse events comparable to control [1419]. In addition, significant reductions in apoB, non-HDL-C and lipoprotein(a), trends for reduction in triglycerides, and modest increases in HDL-C and apoAI, were observed.

PSCK9 exerts complex regulatory functions on lipoprotein metabolism [13]. PCSK9 inhibition correlates with substantial reduction in serum LDL-C levels [1419]. We hypothesized that these large reductions in LDL-C would coincide with reductions in serum levels of all apoB-containing lipoproteins including remnant lipoproteins, possibly because of increased clearance of these lipoproteins by increased availability of LDL receptors.

Using VAP testing, a post hoc analysis of three alirocumab Phase II trials was performed to determine if the significant reductions in LDL-C observed with alirocumab were reflected by reductions across the spectrum of atherogenic LDL subfractions, and to determine the impact on other lipoproteins such as IDL cholesterol (IDL-C) and VLDL cholesterol (VLDL-C).


In the three Phase II trials, 108 patients received alirocumab 150 mg Q2W and 77 received placebo. Baseline characteristics from these patients are shown in Table 1. Baseline and post-treatment samples were available for VAP analysis from 100 alirocumab patients and 71 placebo patients.

Table 1 Baseline characteristics

LDL-C and subfractions

Significant reductions in the cholesterol content of LDL and LDL1–3-C were observed in patients receiving alirocumab vs. placebo (Table 2). Baseline levels of the densest LDL subfraction (LDL4-C) were relatively very low. Percentage changes in levels of LDL4-C were inconsistent between studies, with high standard deviation values, although absolute reductions in LDL4-C were significant vs. placebo for all alirocumab groups (Table 2). When LDL4-C was assessed in a pooled analysis with LDL3-C (as LDL3+4-C; the two densest subfractions), mean reductions of 68.5, 55.2 and 48.8 % were observed in studies 565, 566 and 1003, respectively (p < 0.0001 vs. placebo). Reductions in LDL-C and subfractions were relatively large in the placebo group in study 566 (where the atorvastatin dose was increased at randomisation) compared with the other studies (in which patients received stable background statin therapy) (Table 2). Results were comparable between study 1003 (conducted in heFH patients) and studies 565 and 566 (conducted in non-FH patients) (Table 2). LDL-C reductions estimated using the Friedewald equation in the parent studies were 72.4 % (study 565), 66.2–73.2 % (study 566) and 67.9 % (study 1003; Additional file 1: Table S1). Reductions of 67.5, 62.2–64.6 and 60.3 % were observed in directly measured LDL-C in studies 565, 566 and 1003, respectively, and reductions of 74.9, 68.7–71.6 and 64.7 %, respectively, were observed in LDLr-C (Table 2).

Table 2 Changes from baseline in cholesterol content of LDL subfractions

ApoB/apoA1 ratio

Levels of apoB were significantly reduced in each of the parent studies (Additional file 1: Table S1). Changes in the apoB/apoA1 ratio for these studies have not been reported previously. The apoB/apoA1 ratio was reduced by 50.3 % in study 565, 44.5–47.4 % in study 566 and 46.3 % in study 1003 (p < 0.0001 vs. placebo; Additional file 1: Table S2).


Alirocumab treatment reduced levels of VLDL-C by 26.1–32.4 % and RLP-C (VLDL3-C and IDL-C) by 42.1–52.5 % across the studies (Table 3). Levels of VLDL subfractions VLDL1+2-C and VLDL3-C were reduced by similar amounts. Triglyceride levels were significantly reduced with alirocumab in studies 565 and 566 (Table 3).

Table 3 Changes from baseline in VLDL and remnant-related lipoprotein subfractions and triglycerides

Apo CII and CIII

To investigate further the observed reductions in VLDL-C, the effect of alirocumab on serum levels of apoCII and CIII was assessed. Reductions from baseline of 9.4–27.8 % in apoCII and 14.5–19.1 % apoCIII were observed with alirocumab treatment (Table 4). There was no difference in the ratios of apoCII/VLDL-C or apoCIII/VLDL-C at baseline vs. post-treatment (Additional file 1: Table S3).

Table 4 Changes from baseline in apoCII and apoCIII

Pooled analysis

A pooled analysis combining data from the three trials was generally consistent with the individual study results (Additional file 1: Table S4).


Alirocumab significantly reduced cholesterol levels across the spectrum of LDL subfractions LDL1-C, LDL2-C, LDL3-C and the pool of LDL3+4-C (sum of smaller, denser LDL subfractions). Notably, reductions in LDL subfractions were overall consistent between patients with heFH and primary hyperlipidemia. Reductions in LDL-C subfractions in the placebo arm of study 566 were larger than the other two studies, most likely due to the concomitant atorvastatin dose increase from 10 mg at baseline to 80 mg at randomisation. Small differences between the studies in terms of the percentage change of lipoprotein parameters following alirocumab treatment may be explained by differences in the patient populations, e.g. baseline lipids, HeFH/non-FH, sex distribution and background therapies [1416].

With regards to effects on the densest LDL subfraction (LDL4-C), significant absolute reductions were observed in all alirocumab groups vs. placebo. Mean percentage reductions in this parameter were inconsistent between studies; most likely this is due to low baseline levels and small absolute changes resulting in high levels of variation. In a randomised study, doubling the atorvastatin dose or adding ezetimibe was reported to reduce dense LDL particles by a lesser extent than less dense particles [20]. One explanation for this is that the densest particles have a lower affinity for the LDL receptor [20]; however, it remains to be established why LDL4 has the lowest levels of clearance.

The significant reduction from baseline in the ratio of apoB/apoA1 ratio (range 45–50 % across the studies) suggests further improvement in the atherogenic cholesterol profile with alirocumab treatment. Multiple studies have demonstrated that the apoB/apoA1 ratio is a more sensitive predictor of future cardiovascular events than individual lipoproteins or ratios of cholesterol values [2123]. Levels of apoB may be a more accurate predictor of cardiovascular risk than LDL-C, as apoB more closely estimates the number of circulating LDL particles [24]. A low level of apoA1 is also a cardiovascular risk factor and reflects low serum levels of HDL particles [23].

Alirocumab reduced lipoprotein cholesterol across multiple atherogenic lipoprotein fractions including VLDL-C and IDL-C. This finding is consistent with the fact that all are apoB-containing lipoproteins, some of which may be cleared by LDL receptors, as is LDL-C. It cannot be discerned from these data whether or not alirocumab potentiates RLP clearance by increasing expression of the LDL receptor-related protein or heparin sulfate proteoglycans, both of which are involved in the binding and clearance of remnants [2527]. RLPs are products of VLDL lipolysis and include VLDL3, the most dense VLDL subclass, and IDL, the direct precursor of LDL [28]. There is accumulating evidence demonstrating a causal association between elevated RLP-C levels and an increased risk of ischaemic heart disease [28, 29]. Reductions in RLP-C with alirocumab (24–44 %, placebo-corrected) appears similar if not greater than reductions observed with statins (25 %) [30]. The reductions in apoCII and apoCIII observed in the three studies may be a manifestation of either increased clearance or reduced production/secretion of VLDL particles. The observation that apoCII/VLDL-C and apoCIII/VLDL-C ratios do not change significantly on therapy vs. baseline suggests alirocumab does not impact the synthesis of apoCII or apoCIII.

Limitations of the current analysis include its post hoc nature; the findings should be regarded as hypothesis-generating. In addition, overall patient numbers were relatively small and patients were treated for a limited duration. Although the study populations represent typical patients being treated for heFH or non-FH, there were few patients with diabetes (11 % of the randomised populations in the three studies), hence it is not possible to confirm the effects of alirocumab on lipoprotein fractions in such patients. Analysis of effects of lipid-modifying therapies on LDL-C particle composition may aid understanding of treatment mode-of-action as well as further understanding of the derived clinical benefit of the treatment. However, the clinical utility of measuring lipoprotein subfractions in risk assessment remains to be elucidated, and current guidelines do not advocate such an approach because of a lack of supportive clinical trial data [6].


To conclude, in this post hoc analysis of three Phase II trials, alirocumab 150 mg Q2W reduced cholesterol across the spectrum of atherogenic lipoproteins separated by VAP (including LDL, IDL and VLDL subfractions). Reductions were consistent in both patients with heFH and primary hyperlipidaemia. The potential clinical impact of alirocumab on these lipid variables warrants further investigation. Alirocumab is being assessed in the Phase III ODYSSEY clinical trial program (


Patient samples from three Phase II multicentre, double-blind, parallel-group, placebo-controlled trials were used in this analysis: study 565 (NCT01288443) [14] and study 566 (NCT01288469) [15] in patients with non-familial hypercholesterolaemia (non-FH) and study 1003 (NCT01266876) [16] in patients with heterozygous familial hypercholesterolaemia (heFH). Studies 565 and 1003 had a 12-week double blind period; study 566 had an 8-week double blind period. All were multicenter trials conducted in the US (study 1003 was also conducted in Canada). The study protocols were approved by the institutional review boards at each study center and appropriate ethical approval was obtained. Written informed consent was obtained from all participants in the studies. Patients with LDL-C ≥2.59 mmol/L (100 mg/dL) at baseline on statins (± ezetimibe in study 1003) were treated with subcutaneous alirocumab 50–150 mg every 2 weeks (Q2W) or 150–300 mg every 4 weeks, depending on the study. The 150 mg Q2W alirocumab dose was common to all three trials and is the focus of this analysis.

Background statin was stable in studies 565 and 1003. Study 566 comprised three treatment arms: alirocumab 150 mg Q2W plus atorvastatin 10 mg, alirocumab 150 mg Q2W with atorvastatin dose increase from 10 to 80 mg at randomisation, and placebo with the same atorvastatin dose increase.

Measurement methodology

Cholesterol content of major lipoproteins and subfractions was analysed using VAP (Atherotech Diagnostics Laboratory, Birmingham, AL, USA). VAP is a validated technique that separates lipoproteins based on density by single vertical-spin density gradient ultracentrifugation [10, 11]. The amount of cholesterol of each lipoprotein and subfraction is quantified using a continuous flow analyser and a cholesterol-specific enzymatic/spectrophotometric method. The accuracy and reproducibility of the VAP method are within the requirements of the US Centers for Disease Control-National Heart, Lung, and Blood Institute Lipid Standardization Program [10, 11] and comply with the standards established by the National Cholesterol Education Program guidelines [9]. Accuracy of the VAP method is monitored on an on-going basis by split-sample comparisons with results obtained using beta quantification at the Core Laboratories for Clinical Studies at Washington University, St. Louis, MO [9, 31].

Total LDL-C was determined as the directly measured equivalent of the original definition by Friedewald [32] representing non-HDL-C minus VLDL-C, the sum of cholesterol carried in biologic or “real” LDL (LDLr-C), and IDL (IDL-C). LDLr-C was further separated into four subfractions using VAP: LDL1-C, LDL2-C, LDL3-C, and LDL4-C (increasing in density from subclass 1 through 4). The two densest subfractions, LDL3-C and LDL4-C, were analysed individually and also pooled (LDL3+4-C), representing the sum of dense LDL subfraction cholesterol since LDL4-C typically exists at substantially lower concentrations than the other three LDL subfractions. LDL1-C and LDL2-C were also pooled, representing the sum of the more buoyant, lower density LDL subfraction cholesterol. Other lipoproteins measured using VAP included VLDL-C and its subfractions VLDL1-C, VLDL2-C, and VLDL3-C (again, increasing in density from subclass 1 through 3), IDL-C and its subfractions IDL1−C and IDL2−C (with subclass 2 being more dense), and total RLP cholesterol (RLP-C, comprising VLDL3-C + IDL-C).

The ratio of apoB to apoAI levels was calculated based on measurements determined in the respective parent studies using conventional techniques, as were triglyceride levels [1416]. ApoCII and apoCIII concentrations were measured at Atherotech Diagnostics Laboratory (Birmingham, AL, USA) using reagent kits obtained from Randox Laboratories Limited, UK (apoCII, Cat. No. LP3866; apoCIII, Cat. No. LP3865) and an Architect ci8200 analyser (Abbott Laboratories). The immunoassay methods are based on the reaction of a sample containing human apoCII (or CIII) and specific antiserum to apoCII (or CIII) to form an insoluble complex, the concentration of which can be measured turbidimetrically at 340 nm. Both assays were validated for analytical performance.

Statistical analyses

All statistical analyses were performed using R version 3.0.2. Mean levels of cholesterol in lipoprotein fractions and subfractions, triglycerides, apoCII and apoCIII, and the apoB/apoA1 ratio were assessed in patients receiving alirocumab 150 mg Q2W vs. placebo at baseline and at Week 12 for study 565, Week 8 for study 566 and Week 6 for study 1003. Study 1003 had a Week 12 endpoint; however, 6-week data were used for this analysis due to reduced numbers of patients with available samples at 12 weeks (n = 17; all dosing groups) compared with 6 weeks (n = 75; all dosing groups). To determine if percentage changes from baseline to the 6–12 week time points were significant for alirocumab vs. placebo, analysis of covariance was performed with the baseline value as a covariate. Significance is considered at alpha ≤0.05. P-values were not adjusted for multiplicity and are presented for descriptive purposes only.









familial hypercholesterolaemia


high-density lipoprotein


intermediate-density lipoprotein


low-density lipoprotein


“real” LDL


Proprotein convertase subtilisin/kexin type 9


every 2 weeks


remnant lipoprotein


standard deviation


vertical auto profile


very low-density lipoprotein


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We thank the study patients and investigators, and the following persons from the sponsors for their contributions to data collection and analysis, assistance with statistical analysis, or critical review of the manuscript: Regeneron: William J Sasiela, PhD, Robert Pordy, MD and Carol Hudson, BPharm; Sanofi: Jay Edelberg, MD, PhD and Michael Howard, MBA. Medical writing support was provided by Rob Campbell of Prime Medica Ltd (Knutsford, Cheshire, UK), funded by Sanofi and Regeneron Pharmaceuticals, Inc. Responsibility for opinions, conclusions, and interpretation of data lies with the authors.

Funding source

This work was funded by Sanofi and Regeneron Pharmaceuticals, Inc.

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Corresponding author

Correspondence to Peter P. Toth.

Additional information

Competing interests

Dr Toth has worked as a consultant/on advisory boards for Amgen, AstraZeneca, Merck and Co, Kowa, Novartis, and Regeneron. He is a member of the Speakers Bureau for Amarin, AstraZeneca, GSK, Kowa, and Merck and Co.

Dr Hamon is an employee of Regeneron.

Dr Jones is listed as a co-inventor on a pending patent filed by Johns Hopkins University for a method of LDL-C estimation.

Dr Martin is listed as a co-inventor on a pending patent filed by Johns Hopkins University for a method of LDL-C estimation.

Dr Joshi reports no disclosures.

Dr Kulkarni is an employee of Atherotech and holds stocks. He also receives royalty from the University of Alabama at Birmingham.

Dr Banerjee is an employee of and stockholder in Regeneron.

Dr Hanotin is an employee of Sanofi.

Dr Roth has received consulting and speaking fees from Regeneron and Sanofi and consulting fees from Amgen.

Dr McKenney reports no disclosures.

Authors’ contributions

PPT was involved in the concept and design, data collection and interpretation, and drafting/revising the manuscript. SCH was involved in the concept and design, data collection, performed the statistical analyses, and was involved in drafting/revising the manuscript. SRJ was involved in the concept and design, data collection and interpretation, and drafting/revising the manuscript. SSM was involved in the concept and design, data collection and interpretation, and drafting/revising the manuscript. PHJ was involved in the concept and design, data collection and interpretation, and drafting/revising the manuscript. KRK was involved in the concept and design, data collection and interpretation, and drafting/revising the manuscript. PB was involved in the concept and design, data collection and interpretation, and drafting/revising the manuscript. CH was involved in the concept and design, data collection and interpretation, and drafting/revising the manuscript. EMR was involved in the concept and design, data collection and interpretation, and drafting/revising the manuscript. JMMc was involved in the concept and design, data collection and interpretation, and drafting/revising the manuscript. All authors read and approved the final manuscript.

Additional file

Additional file 1: Table S1.

Changes from baseline in lipids and lipoproteins as measured using conventional methods in the parent studies. Table S2. Change from baseline in apoB/apoAI ratio. Table S3. Changes from baseline in ratios of apoCII/VLDL-C and apoCIII/VLDL-C. Table S4. Pooled data from across the three studies (565, 566, 1003) for changes from baseline in cholesterol content of lipoprotein subfractions, apoB/apoA1 ratio, and levels of apo CII and CIII. (DOCX 45 kb)

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Toth, P.P., Hamon, S.C., Jones, S.R. et al. Effect of alirocumab on specific lipoprotein non-high-density lipoprotein cholesterol and subfractions as measured by the vertical auto profile method: analysis of 3 randomized trials versus placebo. Lipids Health Dis 15, 28 (2016).

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